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Wordfence scanning old site

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I had a problem with my website so reinstalled WordPress and reinstalled my theme. I am trying to scan my website and it keeps bombing out at the last 2 line items
Scanning file contents for infections and vulnerabilities
Scanning files for URLs on a domain blacklist
This is the problem I had before I fixed my site. It had been compromised but I have done a Succuri check and my site is now clean BUT it seems to still be scanning the old files. Should I enable Delete WordFence tables and data on deactivation and then reactivate and scan again. Will it then pick up my new files?


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